Open Science on Cloud using Jupyter Notebooks

Section outline

• Select section Description

  Description

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  in-person

  Ecotekne University Campus, Via Lecce-Monteroni, 73100 LE

  Building A, Seminar room, I floor

  Classroom location

  (hold down CTRL+left mouse button and click the Google Maps/Teams link

  or

  copy the link)

  https://maps.app.goo.gl/R47PY17cBwZA4fXV9

  ONLINE LINK:

  June 25th-27th, 2025

  25 (in-person)

  Prof. Zhiming Zhao (University of Amsterdam), Dr. Spiros Koulouzis, Dr. Gabriel Pelouze

  

  Open Science on Cloud using Jupyter Notebooks is a short course (24 hours) aiming to train scientific staff, such as RI data center staff, to learn technologies and practices for conducting research activities using Jupyter notebooks on Cloud. The course will be delivered using a project-based teaching method. The course will use LifeWatch Notebook-as-a-VRE (NaaVRE) for lab assignments and course projects.
• Select section CLASSROOM

  CLASSROOM

   Ecotekne University Campus, Via Lecce-Monteroni, 73100 LE

  Building A, Seminar room, I floor

  Classroom location

  (hold down CTRL+left mouse button and click the Google Maps link)

  https://maps.app.goo.gl/R47PY17cBwZA4fXV9

  

  
• Select section VIDEORECORDINGS

  VIDEORECORDINGS

  Not available unless: You achieve higher than a certain score in Course total
• Select section Learning Objectives

  Learning Objectives

  Students will reach the following learning objectives:

  1. Understand the basic concepts of Virtual research environment, Research Infrastructure, Scientific workflow, and cloud computing;

  2. Understand the key techniques involved in data and computing intensive research activities;

  3. Able to load external data into the Jupyter environment and develop data-intensive applications; 

  4. Able to apply basic research software quality control practices;

  5. Able to develop a small-size research project using data management, cloud computing, and workflow technologies.
• Select section Open Science and VRE

  Open Science and VRE

  • Select activity Introduction to Open Science and Virtual Research Environment

    

    Introduction to Open Science and Virtual Research Environment File PDF
  • Select activity NaaVRE introduction and hands-on

    

    NaaVRE introduction and hands-on File PDF
  • Select activity Git, Containerization, and CI/CD workflows

    

    Git, Containerization, and CI/CD workflows File PDF
  • Select activity BioDT-Data Streaming Invasive Alien Species Digital Twin Outputs

    

    BioDT-Data Streaming Invasive Alien Species Digital Twin Outputs File PDF
• Select section Cloud workflow

  Cloud workflow

  • Select activity Research asset search, HPC and cloud computing

    

    Research asset search, HPC and cloud computing File PDF